Page 30 - Fister jr., Iztok, and Andrej Brodnik (eds.). StuCoSReC. Proceedings of the 2017 4th Student Computer Science Research Conference. Koper: University of Primorska Press, 2017
P. 30
Structure Prediction in a Hydrophobic-Polar Model
and Cubic Lattice. Applied Soft Computing, 45:61–70,
2016.
[3] K. Chellapilla and G. B. Fogel. Multiple sequence
alignment using evolutionary programming. In
Proceedings of the 1999 Congress on Evolutionary
Computation-CEC99 (Cat. No. 99TH8406), volume 1,
page 452 Vol. 1, 1999.
[4] S. Chen, C. Lin, et al. Multiple dna sequence
alignment based on genetic simulated annealing
techniques. International journal of information and
management sciences, 18(2):97, 2007.
[5] D.-F. Feng and R. F. Doolittle. Progressive sequence
alignment as a prerequisitetto correct phylogenetic
trees. Journal of Molecular Evolution, 25(4):351–360,
Aug 1987.
[6] C. Gondro and B. Kinghorn. A simple genetic
algorithm for multiple sequence alignment. Genetics
and Molecular Research, 6(4):964–982, 2007.
[7] J.-T. Horng, L.-C. Wu, C.-M. Lin, and B.-H. Yang. A
genetic algorithm for multiple sequence alignment.
Soft Computing, 9(6):407–420, Jun 2005.
[8] D. W. Mount. Bioinformatics: Sequence and Genome
Analysis 2nd edition. Cold Spring Harbor Laboratory
Press, 1986.
[9] S. Needleman and C. Wunsch. A general method
applicable to the search for similarities in the amino
acid sequence of two proteins. Journal of Molecular
Biology, 48(3):443–453, 3 1970.
[10] C. Notredame, D. G. Higgins, and J. Heringa.
T-coffee: A novel method for fast and accurate
multiple sequence alignment. J Mol Biol,
302(1):205–17, Sep 8 2000. Journal ArticleResearch
Support, Non-U.S. Gov’t.
[11] J. C. Setubal and J. Meidanis. Introduction to
Computational Molecular Biology. Computer Science
Series. PWS Pub., 1997.
[12] F. Sievers, A. Wilm, D. Dineen, T. J. Gibson,
K. Karplus, W. Li, R. Lopez, H. McWilliam,
M. Remmert, J. So¨ding, J. D. Thompson, and D. G.
Higgins. Fast, scalable generation of high-quality
protein multiple sequence alignments using clustal
omega. Molecular Systems Biology, 7(1), 2011.
StuCoSReC Proceedings of the 2017 4th Student Computer Science Research Conference 30
Ljubljana, Slovenia, 11 October
and Cubic Lattice. Applied Soft Computing, 45:61–70,
2016.
[3] K. Chellapilla and G. B. Fogel. Multiple sequence
alignment using evolutionary programming. In
Proceedings of the 1999 Congress on Evolutionary
Computation-CEC99 (Cat. No. 99TH8406), volume 1,
page 452 Vol. 1, 1999.
[4] S. Chen, C. Lin, et al. Multiple dna sequence
alignment based on genetic simulated annealing
techniques. International journal of information and
management sciences, 18(2):97, 2007.
[5] D.-F. Feng and R. F. Doolittle. Progressive sequence
alignment as a prerequisitetto correct phylogenetic
trees. Journal of Molecular Evolution, 25(4):351–360,
Aug 1987.
[6] C. Gondro and B. Kinghorn. A simple genetic
algorithm for multiple sequence alignment. Genetics
and Molecular Research, 6(4):964–982, 2007.
[7] J.-T. Horng, L.-C. Wu, C.-M. Lin, and B.-H. Yang. A
genetic algorithm for multiple sequence alignment.
Soft Computing, 9(6):407–420, Jun 2005.
[8] D. W. Mount. Bioinformatics: Sequence and Genome
Analysis 2nd edition. Cold Spring Harbor Laboratory
Press, 1986.
[9] S. Needleman and C. Wunsch. A general method
applicable to the search for similarities in the amino
acid sequence of two proteins. Journal of Molecular
Biology, 48(3):443–453, 3 1970.
[10] C. Notredame, D. G. Higgins, and J. Heringa.
T-coffee: A novel method for fast and accurate
multiple sequence alignment. J Mol Biol,
302(1):205–17, Sep 8 2000. Journal ArticleResearch
Support, Non-U.S. Gov’t.
[11] J. C. Setubal and J. Meidanis. Introduction to
Computational Molecular Biology. Computer Science
Series. PWS Pub., 1997.
[12] F. Sievers, A. Wilm, D. Dineen, T. J. Gibson,
K. Karplus, W. Li, R. Lopez, H. McWilliam,
M. Remmert, J. So¨ding, J. D. Thompson, and D. G.
Higgins. Fast, scalable generation of high-quality
protein multiple sequence alignments using clustal
omega. Molecular Systems Biology, 7(1), 2011.
StuCoSReC Proceedings of the 2017 4th Student Computer Science Research Conference 30
Ljubljana, Slovenia, 11 October
